wjawaid. See also theR-universe documentation.Package: enrichR 3.4
Wajid Jawaid
enrichR: Provides an R Interface to 'Enrichr'
Provides an R interface to all 'Enrichr' databases. 'Enrichr' is a web-based tool for analysing gene sets and returns any enrichment of common annotated biological features. Quoting from their website 'Enrichment analysis is a computational method for inferring knowledge about an input gene set by comparing it to annotated gene sets representing prior biological knowledge.' See <https://maayanlab.cloud/Enrichr/> for further details.
Authors:
enrichR_3.4.tar.gz
enrichR_3.4.zip(r-4.5)enrichR_3.4.zip(r-4.4)enrichR_3.4.zip(r-4.3)
enrichR_3.4.tgz(r-4.5-any)enrichR_3.4.tgz(r-4.4-any)enrichR_3.4.tgz(r-4.3-any)
enrichR_3.4.tar.gz(r-4.5-noble)enrichR_3.4.tar.gz(r-4.4-noble)
enrichR_3.4.tgz(r-4.4-emscripten)enrichR_3.4.tgz(r-4.3-emscripten)
enrichR.pdf |enrichR.html✨
enrichR/json (API)
NEWS
| # Install 'enrichR' in R: |
| install.packages('enrichR', repos = c('https://satijalab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/wjawaid/enrichr/issues
- background - Example background genes
- genes790 - 790 gene symbols
- input - Example input genes
Last updated 2 days agofrom:79fad70a8c. Checks:8 OK. Indexed: no.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 02 2025 |
| R-4.5-win | OK | Feb 02 2025 |
| R-4.5-mac | OK | Feb 02 2025 |
| R-4.5-linux | OK | Feb 02 2025 |
| R-4.4-win | OK | Feb 02 2025 |
| R-4.4-mac | OK | Feb 02 2025 |
| R-4.3-win | OK | Feb 02 2025 |
| R-4.3-mac | OK | Feb 02 2025 |
Exports:enrichrlistEnrichrDbslistEnrichrSitesplotEnrichprintEnrichsetEnrichrSite
Dependencies:askpassclicolorspacecurlfansifarverggplot2gluegtablehttrisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeopensslpillarpkgconfigR6RColorBrewerrjsonrlangscalessystibbleutf8vctrsviridisLitewithrWriteXLS
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Upload background list using Speedrichr API | .add_background |
| Upload gene list using Speedrichr API | .add_list |
| Given a Enrichr output, order and subset criteria, returns a data frame accordingly | .enrichment_prep_df |
| FormatGenes | .formatGenes |
| Get enrichment result using Speedrichr API | .get_backgroundenrich |
| onLoad hook to setup package options | .onAttach |
| Internal function to check RCurlOptions | .proxyOpts |
| Download and parse GMT files from Enrichr | .read_gmt |
| Example background genes | background |
| Gene enrichment using Enrichr | enrichr |
| 790 gene symbols | genes790 |
| Helper function for HTTP methods GET and POST | getEnrichr |
| Example input genes | input |
| Look up available databases on Enrichr | listEnrichrDbs |
| List Enrichr Websites | listEnrichrSites |
| plotEnrich | plotEnrich |
| printEnrich | printEnrich |
| Set Enrichr Website | setEnrichrSite |
