Package: SeuratObject
Type: Package
Title: Data Structures for Single Cell Data
Version: 4.1.4
Authors@R: c(
  person(given = 'Rahul', family = 'Satija', email = 'rsatija@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0001-9448-8833')),
  person(given = 'Andrew', family = 'Butler', email = 'abutler@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0003-3608-0463')),
  person(given = 'Paul', family = 'Hoffman', email = 'seurat@nygenome.org', role = c('aut', 'cre'), comment = c(ORCID = '0000-0002-7693-8957')),
  person(given = 'Tim', family = 'Stuart', email = 'tstuart@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0002-3044-0897')),
  person(given = 'Jeff', family = 'Farrell', email = 'jfarrell@g.harvard.edu', role = 'ctb'),
  person(given = 'Shiwei', family = 'Zheng', email = 'szheng@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-6682-6743')),
  person(given = 'Christoph', family = 'Hafemeister', email = 'chafemeister@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-6365-8254')),
  person(given = 'Patrick', family = 'Roelli', email = 'proelli@nygenome.org', role = 'ctb'),
  person(given = "Yuhan", family = "Hao", email = 'yhao@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0002-1810-0822'))
  )
Description: Defines S4 classes for single-cell genomic data and
        associated information, such as dimensionality reduction
        embeddings, nearest-neighbor graphs, and spatially-resolved
        coordinates. Provides data access methods and R-native hooks to
        ensure the Seurat object is familiar to other R users. See
        Satija R, Farrell J, Gennert D, et al (2015)
        <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al
        (2015) <doi:10.1016/j.cell.2015.05.002>, and Stuart T, Butler
        A, et al (2019) <doi:10.1016/j.cell.2019.05.031> for more
        details.
URL: https://mojaveazure.github.io/seurat-object/,
        https://github.com/mojaveazure/seurat-object
BugReports: https://github.com/mojaveazure/seurat-object/issues
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Depends: R (>= 4.0.0), sp (>= 1.5.0)
Imports: future, future.apply, grDevices, grid, Matrix (>= 1.6.1),
        methods, progressr, Rcpp (>= 1.0.5), rlang (>= 0.4.7), stats,
        tools, utils
Suggests: ggplot2, sf, testthat
Collate: 'RcppExports.R' 'zzz.R' 'generics.R' 'graph.R' 'assay.R'
        'centroids.R' 'command.R' 'data.R' 'default.R' 'jackstraw.R'
        'dimreduc.R' 'segmentation.R' 'keymixin.R' 'molecules.R'
        'spatial.R' 'fov.R' 'logmap.R' 'neighbor.R' 'seurat.R'
        'utils.R'
LinkingTo: Rcpp, RcppEigen
Config/Needs/website: pkgdown
Repository: https://satijalab.r-universe.dev
Date/Publication: 2023-09-27 20:12:08 UTC
RemoteUrl: https://github.com/satijalab/seurat-object
RemoteRef: v4.1.4
RemoteSha: 9788970c5789134cdf30d60b2a72d814f9304a84
NeedsCompilation: yes
Packaged: 2026-06-24 11:00:52 UTC; root
Author: Rahul Satija [aut] (ORCID: <https://orcid.org/0000-0001-9448-8833>),
  Andrew Butler [aut] (ORCID: <https://orcid.org/0000-0003-3608-0463>),
  Paul Hoffman [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7693-8957>),
  Tim Stuart [aut] (ORCID: <https://orcid.org/0000-0002-3044-0897>),
  Jeff Farrell [ctb],
  Shiwei Zheng [ctb] (ORCID: <https://orcid.org/0000-0001-6682-6743>),
  Christoph Hafemeister [ctb] (ORCID:
    <https://orcid.org/0000-0001-6365-8254>),
  Patrick Roelli [ctb],
  Yuhan Hao [ctb] (ORCID: <https://orcid.org/0000-0002-1810-0822>)
Maintainer: Paul Hoffman <seurat@nygenome.org>