Getting started with presto26 days ago
Demo data | Quick start | Result columns | Top markers per cluster | Restricting to a subset of groups | Seurat and SingleCellExperiment | Notes on input types | Session info
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Pseudobulk differential expression with DESeq226 days ago
Why pseudobulk? | Demo data | Step 1: collapse cells to pseudobulks | Step 2: one-vs-all DESeq2 | Step 3: top markers per cluster | Step 4: pairwise cluster contrasts | Step 5: within-cluster Case vs Control | Tips | Session info
An R interface to the Enrichr database2 years ago
Installation | Github | CRAN | Usage example | Initialising connection to Enrichr website | Select gene-set libraries | Perform analysis | Without background | With background | Visualise results | Export results | Using enrichR behind a proxy | References